PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0029s0056.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 1092aa    MW: 120940 Da    PI: 7.7842
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0029s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-05635657323
                          ETTTTEEESSHHHHHHHHHH..T CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirt..H 23 
                          C+ Cg +F+++  L+rH+r+  H
  Mapoly0029s0056.1.p 635 CHLCGITFPTQIKLRRHLRRskH 657
                          *******************9777 PP

2zf-C2H216.42.6e-05662685223
                          EETTTTEEESSHHHHHHHHHH..T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt..H 23 
                          +C+ Cgk Fs+ s+L +H  +  H
  Mapoly0029s0056.1.p 662 RCEVCGKKFSSISLLLNHRLKmgH 685
                          8*****************987555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.28E-8630679No hitNo description
SMARTSM003550.051633657IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280635657IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723661686IPR007087Zinc finger, C2H2
SMARTSM003550.52661685IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280663685IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.803781808IPR007087Zinc finger, C2H2
SMARTSM003554.8781803IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280783803IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.136831858IPR007087Zinc finger, C2H2
SMARTSM003550.42831853IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280833853IPR007087Zinc finger, C2H2
SuperFamilySSF579031.88E-1110351086IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500169.4110371086IPR019787Zinc finger, PHD-finger
Gene3DG3DSA:3.30.40.101.0E-1110381086IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002493.5E-510391084IPR001965Zinc finger, PHD-type
PfamPF006287.0E-810401085IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.02210401084IPR001841Zinc finger, RING-type
PROSITE patternPS01359010401083IPR019786Zinc finger, PHD-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1092 aa     Download sequence    Send to blast
MRENTRSMAA AAAAAAAAAA SAAATVKHEE QQAETSYLDF ISLPIIRLDE FDQDELRLLA  60
QFSGHFPEAS FQNLVIPKID RRIFNESAGS RRQTYGKCFA SRHWNSVPDN ADDTGNEEEY  120
EPARSRGRLR KKQQRKVNVA EKTRSAKAVA RVIVERKGRL RLMDSAHQGF RGRPRVSNEA  180
RGQSSGGRKV SWIRRNRPSS AASDSSDDSL WTDSGGKGTR ATGSAKRGRP KKLVPNEVSN  240
EDLKPNGSID NSRKKQKQEI DNLVEEEYEE ELGRRTRKRR ANTNYAVGSG VVEGRGTKRR  300
GERGAVIGRH GEIDQKDDGG RMYFGEEELM DTLTKMKGKW SSSQMKRKIV DATGFPKGWT  360
VLVGLRHTKD GRAYFDYRDW RSPEGRIWTS YREAAAYLIS TVGKDPCFKG LPHPSPLQED  420
ACGPKTLTAD GETSHDAVCS DRDQPFTNGT SLVALMESQD GQPYVPQLFF EAQTAGDLQF  480
LERSLEQDLQ TLERRVCDAS IGNSHTPGDH VDKFLRVACK ADEMAISTQA FGGQVTIKTD  540
PSTCGADGEG SRQLSDSAAN LKPEAPIDSS VHCSKTKPIE CQSAEEVDGS QRLRESPEES  600
LEKEPAGGGQ SDHLNIIGAD CPRHQPLDPE KGPICHLCGI TFPTQIKLRR HLRRSKHLKY  660
LRCEVCGKKF SSISLLLNHR LKMGHTYVAR ETLDLTRVPA QTSNPVGVER PAEMSNIVLG  720
LLSDVHRSVE AWDSDQPSIL KETSNSSTQS VRSAGISVPN MLERVKGELE DVAPGKISGV  780
FECKTCHKIF HHQSKFWGHL SSHSNKKGEM VHTAPRSLKC PRSLPVPDGV YECDVCHKIF  840
HHQSKYWGHL SIHSNKRKKG PTSSSLHDLE SDMLNSRMVE EPKPSVRELV SGSNGVEVNH  900
TACAKQHVTK SVFWKLLDDS LPPEGANHES VPCREEATTR PLAPCTKEEA GDREANTGFQ  960
SPLEVNFGPT GFTDVPQAKS SPPVLSLHSG SLFNHGLLEQ KIGEGQRIIN DINEVSVGIE  1020
TIWKQLSEKT PSMDVGNEAC PVCRKDDDQP RHLICDWCEK EFHQGCLSPV LHEVPVDWIC  1080
PFCRTRGAQT L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP203579
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.15e-06C2H2-like zinc finger protein